DisGeNET - a database of gene-disease associations

List of shared variants

Diabetes Mellitus, Non-Insulin-Dependent, C0011860

Disease: Metabolic Syndrome X

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs429358	APOE	0.590	0.600	19	44908684	missense variant	T/C	snv	0.14	0.16	66
rs58542926	TM6SF2	0.630	0.440	19	19268740	missense variant	C/T	snv	6.5E-02	5.8E-02	42
rs641738	LOC112268246 ; TMC4 ; MBOAT7	0.689	0.320	19	54173068	missense variant	T/A;C;G	snv			22
rs7412	APOE	0.641	0.640	19	44908822	missense variant	C/T	snv	6.2E-02	7.9E-02	47
rs750359414	RETN	0.851	0.240	19	7669884	missense variant	C/G;T	snv	4.0E-06; 4.0E-06		5
rs17782313		0.683	0.480	18	60183864	intergenic variant	T/C	snv		0.24	34
rs2000813	LIPG	0.763	0.200	18	49567494	missense variant	C/A;T	snv	4.0E-06; 0.27; 4.0E-06	0.23	9
rs11868035	RAI1 ; SREBF1	0.763	0.200	17	17811787	splice region variant	G/A	snv	0.45	0.33	14
rs1267969615	ACE	0.532	0.760	17	63490960	missense variant	T/C	snv	4.0E-06		100
rs1337503417	KRT16	0.790	0.160	17	41612325	missense variant	G/T	snv	4.0E-06		12
rs1799941	SHBG	0.763	0.280	17	7630105	5 prime UTR variant	G/A	snv		0.18	11
rs2291725	GIP	0.882	0.120	17	48961770	missense variant	T/C	snv	0.50	0.40	4
rs2291726	GIP	0.925	0.080	17	48961892	intron variant	T/A;C	snv			3
rs6257	SHBG	0.827	0.200	17	7630399	3 prime UTR variant	T/C	snv	9.4E-02	8.1E-02	5
rs6259	SHBG	0.658	0.400	17	7633209	missense variant	G/A	snv	8.9E-02	8.1E-02	27
rs11646213		0.827	0.320	16	82609046	intergenic variant	A/T	snv		0.47	6
rs1421085	FTO	0.752	0.280	16	53767042	intron variant	T/C	snv		0.31	28
rs1558902	FTO	0.827	0.120	16	53769662	intron variant	T/A	snv		0.31	21
rs1800775	CETP	0.790	0.240	16	56961324	upstream gene variant	C/A;G	snv	0.51; 5.7E-06		18
rs3764261		0.732	0.280	16	56959412	upstream gene variant	C/A	snv		0.31	26
rs5882	CETP	0.649	0.400	16	56982180	missense variant	G/A;C	snv	0.62		35
rs708272	CETP	0.708	0.440	16	56962376	intron variant	G/A	snv	0.42	0.38	24
rs7202116	FTO	0.882	0.120	16	53787703	intron variant	A/G	snv		0.41	7
rs7204609	FTO	0.827	0.200	16	53799693	intron variant	T/C	snv		0.14	6
rs773641005	GOT2	0.742	0.240	16	58723829	missense variant	T/C	snv			14